PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g23010.4
Common NameLR48_Vigan02g048600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 194aa    MW: 21393.2 Da    PI: 8.477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g23010.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-2055105255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ +++g
  Vang06g23010.4  55 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDRAAFRMRG 105
                     8********.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.69E-3354113No hitNo description
Gene3DG3DSA:3.30.730.105.3E-3354114IPR001471AP2/ERF domain
PROSITE profilePS5103224.40855113IPR001471AP2/ERF domain
PfamPF008473.7E-1555105IPR001471AP2/ERF domain
SMARTSM003809.5E-3955119IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2355115IPR016177DNA-binding domain
PRINTSPR003671.1E-135667IPR001471AP2/ERF domain
PRINTSPR003671.1E-1395115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
LKNITIPSIT SGLVMPHHME TTSSTTATTL GSTVYDSSNQ VSSLDDGNNS REDKHYRGVR  60
RRPWGKFAAE IRDPNRKGSR VWLGTFDTAI EAAKAYDRAA FRMRGSKAIL NFPLEVGESE  120
EESVSIKVGL KREREEESEG KKESNKLVKK EECSPKGVCP LTPSCWKGFW DTDVMGTIFS  180
VPPLSPLSPL MVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-3354116163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140149KKESNKLVKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145468.11e-109hypothetical protein PHAVU_007G241600g
SwissprotQ404782e-57ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A0L9TV101e-142A0A0L9TV10_PHAAN; Uncharacterized protein
STRINGGLYMA20G16910.12e-94(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-42ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]